---

name: review-r description: Read-only R code review protocol for .R scripts. Checks code quality, reproducibility, domain correctness, tidyverse idioms, and professional standards; produces a report without editing. Use when user says "review this R script", "check the R code", "audit the analysis code", "code review on the R", or when an R file is touched as part of a paper submission. NOT for running the code — pair with /audit-reproducibility for numeric verification. argument-hint: "[filename or 'all' or 'LectureN']" allowed-tools: ["Read", "Grep", "Glob", "Write", "Agent", "Task"] disallowed-tools: ["Edit", "MultiEdit"]

Review R Scripts

Run the comprehensive R code review protocol.

Steps

1. Identify scripts to review:

   • If $ARGUMENTS is a specific .R filename: review that file only
   • If $ARGUMENTS is LectureN: review all R scripts matching that lecture
   • If $ARGUMENTS is all: review all R scripts in scripts/R/ and Figures/*/

2. For each script, launch the r-reviewer agent with instructions to:

   • Follow the full protocol in the agent instructions
   • Read .claude/rules/r-code-conventions.md for current standards
   • Return its report as its final response (ending with the findings json block); this skill saves it to quality_reports/[script_name]_r_review.md — the agent is read-only

3. After all reviews complete, present a summary:

   • Total issues found per script
   • Breakdown by severity (Critical / High / Medium / Low)
   • Top 3 most critical issues

4. Leave the R source files unchanged — the report goes to the user, who decides what to fix. Only produce reports. Fixes are applied after user review.