rea-changelog-update
rea-changelog-update
Prepare or rewrite REA release changelogs and GitHub release notes from pinned Git history, with verified contributor thanks and Release Please synchronization.
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check-pr
check-pr
Check a GitHub, GitLab, or Perforce PR/MR/CL for review comments, failing checks, and PR-body gaps. Use when asked to inspect, fix, or prepare a change for submission.
pr-gardening
pr-gardening
Discover the pull requests this Paperclip instance opened (never community contributions), report what each is for and how confident we are that it is merge-ready, and automatically drive the non-ready ones back to green with /prepare-paperclip-pr — without ever merging.
pr-report
pr-report
Produce a maintainer-grade PR or contribution report as HTML or Markdown. Use when asked to deeply review a PR, explain a design, compare systems, or prepare a merge recommendation.
prepare-paperclip-pr
prepare-paperclip-pr
Prepare a Paperclip branch for PR with commits, template body, and checks.
github-pr-workflow
github-pr-workflow
Prepare a GitHub pull request from a feature branch — branch hygiene, commit shape, title/body, verification notes, screenshots for UI work, and replies to review comments.
prepare-mcp-integration
prepare-mcp-integration
Prepare MCP/vendor integrations through cited research, a content PR, exact-revision human approval, and one governed Paperclip connector PR per approved connection. Use for new integration research and delivery; not for ad hoc connector coding that bypasses the playbooks.
bulk-rnaseq
bulk-rnaseq
Prepares bulk RNA-seq FASTQ, Salmon, STAR or featureCounts output for gene-level differential expression. Covers nf-core/rnaseq and standalone quantification, biological replication, strandedness, reference provenance, validated count assembly and a PyDESeq2 handoff. Use for FASTQ-to-counts analysis, nf-core/rnaseq configuration, STAR/Salmon quantification,…
clinical-decision-support
clinical-decision-support
Prepares and validates research-only clinical decision-support evaluation, evidence-profile, cohort, survival, biomarker/model, privacy, and governance artifacts. Supports aggregate or synthetic research documentation and traceability, excluding patient care and live clinical operation.
iso-standards-readiness
iso-standards-readiness
Prepares and structurally reviews readiness evidence for ISO management-system and laboratory-competence standards - ISO 13485 medical device QMS, ISO 14971 device risk management, ISO/IEC 17025 testing and calibration laboratories, and ISO 15189 medical laboratories. Use when organizing declared scope, controlled documents, risk-management files, scope of …
pacsomatic
pacsomatic
Prepares and launches nf-core/pacsomatic matched tumor-normal PacBio HiFi genomics workflows from unaligned BAM inputs. Supports samplesheet generation, pinned Nextflow launch artifacts, local checks, LSF/Slurm/PBS Pro/SGE launcher submission, and startup troubleshooting. Use for pacsomatic run preparation and execution, not general short-read somatic analy…
peer-review
peer-review
Prepares evidence-bounded, constructive peer-review drafts and structured manuscript assessments. Supports authorized review of scientific manuscripts, protocols, preprints, or research proposals; reporting-guideline selection; claim–evidence checks; methods, statistics, reproducibility, ethics, figure/table, and citation critique; or revision-response plan…
venue-templates
venue-templates
Prepares journal manuscripts, conference papers, research posters, and grant documents using venue-specific formatting guidance and bundled LaTeX scaffolds. Supports selecting an official template, checking current page or anonymity rules, adapting academic writing to a venue, or inspecting a submission PDF.
audit-preparation
audit-preparation
Audit preparation register: required document, period covered, request and receipt dates, preparer and reviewer, auditor queries and adjustments. Use for assembling an audit file.
browser-extension-launch
browser-extension-launch
Builds, tests, packages, and prepares Chrome extensions for store launch from a plain-language idea; use for new extensions, fixes, releases, and submission recovery.
cc-skill-strategic-compact
cc-skill-strategic-compact
Prepare a verified checkpoint before condensing an agent conversation at a phase boundary. Use during long tasks when context is repetitive; preserves constraints, evidence, decisions and the next action.
loopy
loopy
Discover, find, compare, audit, repair, adapt, craft, run, debrief, and prepare repeatable AI-agent loops for publication.
sequence-psychologist
sequence-psychologist
Plan email nurture and multi-touch communication sequences when each message should build trust and prepare the next decision.
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Direct from traceable public skill sources
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