Data & research · SKILL.md

kegg-pathway-analysis

kegg-pathway-analysis

Guide to KEGG pathway enrichment for DEG results. Covers ORA vs GSEA, mandatory directionality splitting, KEGG organism codes, API failure handling with offline fallbacks, cross-condition comparisons, and answer-first reporting. Consult when running enrichment with clusterProfiler or gseapy.

Independent GitHub snapshot · Automated classification · Original documentation governs

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npx skills add jaechang-hits/sciagent-skills --skill kegg-pathway-analysis

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kegg-pathway-analysis

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