Productivity · SKILL.md

cnvkit-copy-number

cnvkit-copy-number

Detect somatic CNVs from WES/WGS/targeted BAMs (CNVkit v0.9.x). Bin coverage in target/antitarget regions, normalize vs reference, segment with CBS/HMM, call amps/dels, scatter/diagram plots, purity/ploidy, VCF/SEG export. CLI plus Python API (cnvlib). Use GATK CNV for deep WGS with population controls; use CNVkit for targeted/exome where antitarget bins ma…

Independent GitHub snapshot · Automated classification · Original documentation governs

Jjaechang-hits / sciagent-skillsSource-available

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npx skills add jaechang-hits/sciagent-skills --skill cnvkit-copy-number

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cnvkit-copy-number

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