Productivity · SKILL.md

pysam-genomic-files

pysam-genomic-files

Read/write SAM/BAM/CRAM, VCF/BCF, FASTA/FASTQ. Region queries, pileup, variant filtering, read groups. Python htslib wrapper exposing samtools/bcftools CLI. Use STAR/BWA for alignment; GATK/DeepVariant for variant calling.

Independent GitHub snapshot · Automated classification · Original documentation governs

Jjaechang-hits / sciagent-skillsSource-available

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TERMINAL

npx skills add jaechang-hits/sciagent-skills --skill pysam-genomic-files

Run the command in your terminal. Review the code and license before installing.

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Source code

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Review scripts and permissions before installing.

Source code

pysam-genomic-files

Skill documentation

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