Productivity · SKILL.md

bio-gatk-variant-calling

bio-gatk-variant-calling

Variant calling with GATK HaplotypeCaller following best practices. Covers germline SNP/indel calling, GVCF workflow for cohorts, joint genotyping, and variant quality score recalibration (VQSR). Use when calling variants with GATK HaplotypeCaller.

Independent GitHub snapshot · Automated classification · Original documentation governs

Ffreedomintelligence / openclaw-medical-skillsNOASSERTION

Skill documentation

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TERMINAL

npx skills add freedomintelligence/openclaw-medical-skills --skill bio-gatk-variant-calling

Run the command in your terminal. Review the code and license before installing.

Check the original repository for this skill’s terms and download options.

Source code

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License: NOASSERTION
Version / branch: HEAD · 2ee8c3a9
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Review scripts and permissions before installing.

Source code

bio-gatk-variant-calling

Skill documentation

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