spatialdata-squidpy

Spatial omics workflows with SpatialData and Squidpy alongside scanpy, anndata, and napari-viz. Use when working with Visium, Xenium, CosMx, MERFISH, Slide-seq, spatial transcriptomics, spatial proteomics, tissue images linked to AnnData, spatial neighbor graphs, spatial autocorrelation, ligand-receptor proximity, image features, or napari-spatialdata.

Independent GitHub snapshot · Automated classification · Original documentation governs