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depmap
Retrieves and analyzes Cancer Dependency Map (DepMap) release data, including CRISPR Chronos gene effects, cancer model annotations, omics biomarkers, and PRISM drug sensitivity. Supports cancer-selective dependency, co-essentiality, and candidate synthetic-lethality analyses with release-aware identifiers and statistical checks.
competitive-teardown
Analyzes competitor products and companies by synthesizing data from pricing pages, app store reviews, job postings, SEO signals, and social media into structured competitive intelligence. Produces feature comparison matrices scored across 12 dimensions, SWOT analyses, positioning maps, UX audits, pricing model breakdowns, action item roadmaps, and stakehol…
research-summarizer
Structured research summarization agent skill for non-dev users. Handles academic papers, web articles, reports, and documentation. Extracts key findings, generates comparative analyses, and produces properly formatted citations. Use when: user wants to summarize a research paper, compare multiple sources, extract citations from documents, or create structu…
clinical-decision-support
Generate professional clinical decision support (CDS) documents for pharmaceutical and clinical research settings, including patient cohort analyses (biomarker-stratified with outcomes) and treatment recommendation reports (evidence-based guidelines with decision algorithms). Supports GRADE evidence grading, statistical analysis (hazard ratios, survival cur…
literature-review
Conduct comprehensive, systematic literature reviews using multiple academic databases (PubMed, arXiv, bioRxiv, Semantic Scholar, etc.). This skill should be used when conducting systematic literature reviews, meta-analyses, research synthesis, or comprehensive literature searches across biomedical, scientific, and technical domains. Creates professionally …
decision-visualization
Decision-specific visualization skill for creating clear, actionable visual representations of analyses
data-flow-analysis-framework
Design and implement data-flow analyses for compiler optimization
meta-analysis-engine
Skill for conducting meta-analyses of research findings
statistical-test-selector
Skill for selecting appropriate statistical tests for analyses
gis-mapping-humanities
Create spatial visualizations and geographic analyses for historical and cultural research questions using QGIS/ArcGIS
quantitative-methods
Design and execute statistical analyses including regression modeling, hypothesis testing, power analysis, and robustness checks using R, Stata, SPSS, or Python
systematic-review
Conduct comprehensive literature searches, quality assessments, evidence synthesis, and meta-analyses
tooluniverse-gwas-study-explorer
Compare GWAS studies, perform meta-analyses across cohorts, and assess signal replication. Uses GWAS Catalog metadata, study-level statistics, and cross-cohort comparison. Use for evaluating GWAS reproducibility for a trait, meta-analysis sample size and effect-size aggregation, and detecting study heterogeneity (population, design, ancestry).
tooluniverse-scientific-peer-review
Review scientific manuscripts, abstracts, methods, statistical analyses, results, discussions, protocols, and experimental designs using calibrated rubrics and prioritized revision advice. Use for journal-style peer review, study-design scoring, methodology or statistics critique, novelty and literature-context assessment, interpretation checks, scientific …
tooluniverse-gwas-study-explorer
Compare GWAS studies, perform meta-analyses across cohorts, and assess signal replication. Uses GWAS Catalog metadata, study-level statistics, and cross-cohort comparison. Use for evaluating GWAS reproducibility for a trait, meta-analysis sample size and effect-size aggregation, and detecting study heterogeneity (population, design, ancestry).
tooluniverse-metabolomics-pathway
Metabolomics pathway analysis — metabolite identification (HMDB, KEGG, ChEBI), pathway mapping (Reactome, KEGG, MetaCyc), disease associations, enzyme/gene linkage. Use for metabolite-to-pathway-to-disease connections, BridgeDb-based ID conversion, and integrating metabolomics with gene-level pathway analyses.
tooluniverse-population-genetics-1000genomes
Population genetics using the 1000 Genomes Project (IGSR) — superpopulation/population search, sample metadata, variant frequencies across AFR/AMR/EAS/EUR/SAS, ancestry-specific analyses. Use for ancestry comparison, population-aware allele frequency lookups, and 1000-Genomes-cohort-specific analyses (distinct from gnomAD which has different sample composit…
tooluniverse-scientific-peer-review
Review scientific manuscripts, abstracts, methods, statistical analyses, results, discussions, protocols, and experimental designs using calibrated rubrics and prioritized revision advice. Use for journal-style peer review, study-design scoring, methodology or statistics critique, novelty and literature-context assessment, interpretation checks, scientific …
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