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name: dev-guide-runtime-self-check description: > Nested lingtai-dev-guide reference for deep, trigger-gated provenance and lifecycle diagnosis during a source/venv/interpreter or TUI-binary cutover, for changed or failing MCP source, or when a runtime mismatch is suspected. Use only the matching import/distribution/editable/HEAD, binary, MCP-source, live-object, redaction, or PYTHONPATH-recovery material. Ordinary same-runtime reload sequencing belongs to kernel system-manual -> refresh-precheck. version: 2.0.0 last_changed_at: "2026-09-09T00:00:00Z" maintenance: "If you find stale or incorrect information here, use the lingtai-issue-report skill to assemble evidence and obtain per-issue human consent before filing an issue. Never include secrets, credentials, tokens, or private paths."

Runtime Self-Check

Nested lingtai-dev-guide reference. This is a deep diagnostic library selected only when a cutover, observed failure, or suspected mismatch raises a provenance or lifecycle question. Kernel system-manual → reference/refresh-precheck/SKILL.md is the single owner of ordinary agent refresh sequencing; this reference neither repeats nor initiates that transaction.

Core principle

Probe, confirm, and report only the assertion named by the trigger. Diagnosis is read-only. A rebuild, editable reinstall, relink, source update, process stop, or clean relaunch needs separate exact authorization and its owning procedure. Never paste secrets into a report: redact tokens, keys, chat IDs, and private absolute paths, preferring <your-lingtai-checkout> / ~/.lingtai-tui/... forms.

When to use

• A source/venv/interpreter-selector or editable-install cutover needs one exact runtime provenance assertion.
• A TUI-binary cutover needs binary, symlink, build, or PATH provenance.
• Changed or failing MCP source needs its specific module-source assertion, or MCP boot/tool behaviour suggests a source mismatch.
• On-disk source and live behaviour disagree, including a suspected long-lived service/adapter/cache mismatch.
• A proven inherited PYTHONPATH mismatch needs source diagnosis or the separately authorized clean-relaunch recovery.

Ordinary same-runtime reload does not use this deep checklist. A routine reload or preset swap with no provenance question routes directly to kernel system-manual → reference/refresh-precheck/SKILL.md.

Source/venv cutover diagnostic handoff

A merged change or correct-looking checkout is not proof of what the live agent imports. Keep the owner boundary explicit:

1. The update/build owner uses the relevant §1 probe to identify the exact runtime interpreter, imported source/package, HEAD/version, and intended selectors. Any source update or reinstall remains that owner's separately authorized action; stop rather than modify a protected dirty checkout.
2. That owner freezes and hands off the cutover target evidence. Kernel system-manual → reference/refresh-precheck/SKILL.md owns the transaction and its targeted receipt; this diagnostic does not restate either.
3. Use only the assertion the trigger needs: §1 for import provenance, §6 when source is present but live behaviour still disagrees, §2–§3 for a TUI-binary cutover, or §4 for changed/failing MCP source.
4. Report only the selected evidence under §7's redaction rules.

1. Agent runtime / kernel source probe (cutover or mismatch only)

Which lingtai package the agent venv executes, whether it is editable, and the git HEAD behind it. Use the TUI runtime venv Python, not whatever is on PATH:

VENV_PY="$HOME/.lingtai-tui/runtime/venv/bin/python"

"$VENV_PY" - <<'PY'
import importlib.util, importlib.metadata as md, json, pathlib, sys
spec = importlib.util.find_spec("lingtai")
origin = spec.origin if spec else None
pkg_dir = pathlib.Path(origin).resolve().parent if origin else None
editable = bool(pkg_dir and "site-packages" not in str(pkg_dir))
print(json.dumps({
    "python": sys.executable,
    "lingtai_file": origin,
    "package_dir": str(pkg_dir) if pkg_dir else None,
    "editable_install": editable,
}, indent=2))
try:
    import lingtai.kernel as _kernel
    _kernel_name = 'lingtai.kernel'
except ImportError:
    import lingtai_kernel as _kernel
    _kernel_name = 'lingtai_kernel'
print(f'{_kernel_name}: {_kernel.__file__}')
try:
    print('dist:', md.version('lingtai-kernel'))
    print('direct_url:', md.distribution('lingtai-kernel').read_text('direct_url.json') or '<none>')
except Exception as e:
    print('dist metadata:', repr(e))
PY

A path under site-packages/ means the published wheel is in front (not dev mode); a path under your kernel checkout (.../lingtai-kernel/src/lingtai/__init__.py) means editable/dev mode is live — usually what you want during development.

Then capture the checkout's git state, so a stale HEAD can't masquerade as fresh:

KERNEL_SRC="$("$VENV_PY" -c 'import lingtai,os;print(os.path.dirname(os.path.dirname(lingtai.__file__)))')"
git -C "$KERNEL_SRC" rev-parse --short HEAD 2>/dev/null
git -C "$KERNEL_SRC" status --short --branch 2>/dev/null | head

Editable installs are detected via PEP 610 direct_url.json and are not auto-upgraded by the TUI (tui/internal/config/venv.go:isEditableLingtaiInstall), so once dev mode is established it stays. An unexpected site-packages path means the auto-upgrader or a brew reinstall clobbered it — re-establish dev mode per the setup/gotchas references.

PYTHONPATH shadowing check

Before trusting an import probe, confirm the live agent process is not carrying a stale PYTHONPATH that overrides the venv. Debug sessions often export PYTHONPATH=... to test a scratch/worktree/temp repo, and because LingTai's refresh watcher copies the parent environment verbatim, that pollution survives refresh — a plain refresh re-inherits it and the wrong import can persist until the process is relaunched from a clean environment. See reference/gotchas/SKILL.md ("PYTHONPATH pollution") for the full incident and rules.

PID=<agent-parent-pid>
ps eww -p "$PID" | tr ' ' '\n' | grep '^PYTHONPATH=' && echo 'POLLUTED' || echo 'clean'

Then confirm the import resolves from the intended venv under a clean environment (this is the source of truth, not whatever python resolves on PATH):

VENV_PY=<configured-venv>/bin/python   # e.g. ~/.lingtai-tui/runtime/venv/bin/python
env -u PYTHONPATH "$VENV_PY" - <<'PY'
import importlib.util, json
spec = importlib.util.find_spec("lingtai")
print(json.dumps({"lingtai_file": spec.origin if spec else None}))
PY

If ps eww shows a PYTHONPATH and the venv probe differs, an ordinary refresh will not fix it because the watcher re-inherits the pollution; use the clean-relaunch recipe in §8 instead.

2. Active binary and dev-mode symlink check (TUI cutover only)

Use this section only for a TUI/portal binary cutover or suspected PATH/build mismatch. The TUI binary is lingtai-tui (never lingtai-agent, which is the Python CLI).

which lingtai-tui
readlink -f "$(which lingtai-tui)"   # expect <your-lingtai-checkout>/tui/bin/lingtai-tui in dev mode
lingtai-tui --version                # -N-gSHORTSHA suffix = dev build; clean vX.Y.Z = brew install in front

A clean vX.Y.Z means the brew-installed binary wins; a -N-gSHORTSHA suffix (from git describe --tags) means dev mode is live. Repeat for lingtai-portal when the portal is in scope.

3. Rebuild the active TUI from a clean release worktree

Use this section only when a TUI/portal cutover actually requires a rebuild and that mutation has separate exact authorization. To make the running binary reflect origin/main (or a release head), rebuild from a clean worktree, not a dirty feature branch. Rebuild both binaries when both are in scope — project migrations are retired, so there is no .lingtai/meta.json version gate to keep in lockstep (see reference/architecture/SKILL.md).

REPO=<your-lingtai-checkout>
git -C "$REPO" fetch origin main --tags --prune

# Build both when the change touches either binary (no meta.json version lockstep).
cd "$REPO/tui" && make build
cd "$REPO/portal" && make build

Verify the rebuild actually landed on PATH

make dev succeeding and --version printing a fresh-looking -N-gSHORTSHA do not prove your shell runs the binary you just built. On a machine with many worktrees, /opt/homebrew/bin/lingtai-{tui,portal} often symlink into another worktree's tui/bin/lingtai-tui, so your build never reaches PATH — and --version can read the same string from either build. Check link target, source commit, and mtime explicitly:

# What does PATH actually resolve to, and where does the symlink point?
which lingtai-tui
readlink "$(which lingtai-tui)"          # the immediate symlink target
readlink -f "$(which lingtai-tui)"       # fully resolved path — which worktree's bin?
readlink -f "$(which lingtai)"           # same check for the `lingtai` launcher

# Is that the worktree you just built in? Compare to your build output path:
ls -l "$REPO/tui/bin/lingtai-tui"        # mtime should be seconds-fresh after make
stat -f '%m %N' "$(readlink -f "$(which lingtai-tui)")"   # mtime of the on-PATH binary

# Source commit the on-PATH binary was built from (must match $REPO's HEAD):
lingtai-tui --version                    # vX.Y.Z-N-gSHORTSHA — compare SHA to:
git -C "$REPO" rev-parse --short HEAD

SHA, mtime, and resolved path must all agree before you trust the binary. If readlink -f lands in a different worktree than $REPO, either re-link /opt/homebrew/bin/lingtai-{tui,portal} to $REPO's binaries or build in the worktree the symlink already targets. If they are real binaries rather than symlinks, re-link them (see the setup reference) before expecting rebuilds to take effect.

Worktree caveat — never strand the PATH symlink. When you rebuild from a clean worktree because the primary checkout is dirty, /opt may already point into yet another worktree (the one currently live). Before removing or re-linking anything: (a) readlink -f both /opt/homebrew/bin/lingtai-tui and …/lingtai to learn which worktree they target; (b) ensure /opt points at your rebuilt tui/bin/lingtai-tui, or clearly report that it still points elsewhere; and (c) do not git worktree remove a worktree the PATH symlink targets — that leaves a dangling /opt link and a broken lingtai-tui on PATH. Clean it up only after re-linking /opt to a surviving build.

4. MCP / addon source check (changed or failing module only)

Use this only when a named MCP package/config changed, an MCP boot/tool failure occurred, or a module-source mismatch is suspected. Probe only the module named by that trigger; never inventory unrelated addons or print configured secrets:

VENV_PY="$HOME/.lingtai-tui/runtime/venv/bin/python"
MOD="lingtai.mcp_servers.telegram"  # replace with the one changed/failing module

"$VENV_PY" - "$MOD" <<'PY'
import importlib.util, json, sys
module = sys.argv[1]
spec = importlib.util.find_spec(module)
print(json.dumps({module: spec.origin if spec else None}, indent=2))
PY

For the relevant MCP config, audit references — not values: an entry should reference ${ENV_VAR} rather than a hardcoded key, and report "uses env reference" vs "hardcoded (length N)" without echoing the secret. Full audit methodology and safe-reporting format: reference/security-audit/SKILL.md. MCP boot failures and preset/path mismatches: reference/debug-troubleshoot/SKILL.md.

5. Trigger-to-section index

Current trigger	Load only
Source/venv/interpreter or editable-install cutover; suspected import/distribution/HEAD mismatch	§1
TUI/portal binary cutover or suspected PATH/symlink/build mismatch	§2; §3 only when an authorized rebuild is required
Named MCP source/config change, boot failure, or module-source mismatch	§4 for that module only
On-disk source disagrees with live service/adapter/cache behaviour	§6
Need to disclose selected evidence safely	§7
Proven inherited PYTHONPATH pollution requires owner-authorized process recovery	§1 for diagnosis, then §8

If no row matches, stop rather than manufacture a cross-subsystem audit. For an ordinary same-runtime reload or preset swap, use kernel system-manual → reference/refresh-precheck/SKILL.md, not this index.

6. Live object/adapter lifecycle — source-on-disk ≠ rebuilt-at-runtime

Use this only when the expected source is present but observed live behaviour still disagrees. The selected provenance probe confirms the right files are imported; it does not prove the long-lived runtime objects built from those files were rebuilt. A service or adapter constructed once at agent init can survive lifecycle reloads whenever the inputs gating its rebuild did not change — so new source can be on disk and imported while the live agent still serves a stale object.

This bit the Codex prompt-cache work (PRs #406/#411): the affinity/cache source was present and imported, but after a live refresh the token ledger still showed the old stable id with no prompt_cache_key and no rotation. The agent rebuilt its LLMService only when a coarse rebuild-gate bucket (provider/model/base_url/provider-defaults) changed, and that bucket was stable across refresh for this provider — so the old service and its cached adapter outlived the refresh. The fix forced a service/adapter rebuild on the relevant live refresh while preserving chat-history replay.

The reusable lesson: when a fix "should be live" but behaviour disagrees, grepping or importing the source is not evidence — verify the runtime object.

• Identify what gates the rebuild of the object (service, adapter, client, cache), and confirm that gate actually changes when the fix should take effect. A rebuild depending on an input stable across refresh will silently never fire.
• Verify object identity/lifecycle, not just presence: was the adapter re-constructed, or is the init-time instance still alive?
• Check the observable metadata the fix should produce. For cache work that is the token ledger: is codex_prompt_cache_key (or equivalent) non-empty, and does the stable id rotate when it should?
• Where a fingerprint is computable, compare before/after concretely — an old sha256(anchor)[:8]-style id versus an epoch-stamped one — rather than trusting "the code looks right."

If metadata or fingerprint still reflects old behaviour after refresh, the object was not rebuilt regardless of what the import probe says. That is the bug.

7. Safe evidence reporting

Report a compact, trigger-dependent evidence pack. Omit every subsystem not selected by the trigger:

runtime self-check @ <iso-timestamp>
- trigger:            <cutover or suspected mismatch>
- selected assertion: <import | binary | MCP source | live object | PYTHONPATH>
- result:             <expected vs observed>
- source evidence:    <only paths/version/HEAD/fingerprint relevant to assertion>
- anomalies:          <none | short list>

For example, source/venv evidence may name lingtai source and kernel HEAD; binary evidence may name the resolved binary and version; MCP evidence may name only the changed/failing module's source. Do not report all three by default.

Redaction rules, always: replace any token/key/password with <REDACTED> and never print env values; generalize private absolute paths to <your-lingtai-checkout> / ~/.lingtai-tui/...; omit or redact Telegram chat IDs, emails, and recipient lists; report "match found" / "uses env reference", not the matched secret.

8. Clean relaunch of a polluted agent process

When a live agent carries a PYTHONPATH that points at another project's source and a plain refresh re-inherits it, the only correct recovery is an identity-verified clean relaunch of the process with PYTHONPATH unset in the new parent and children. This is an authorized owner/operator action — get explicit permission for the exact PID/root before doing it.

1. Identity-verify the old parent. Confirm the PID, full command, parent lineage, working directory, and start identity match the agent root you think you are restarting. Never kill on a ps | grep | xargs kill hunch.

2. SIGTERM the old parent gracefully and confirm its children exit.

3. Launch the new parent from a clean environment, explicitly unsetting the pollution the session would otherwise inherit:

   ROOT=<agent-root-dir>                 # e.g. .../.lingtai/<agent>
   VENV_PY=<configured-venv>/bin/python  # exact venv from init.json
   env -u PYTHONPATH \
       -u LINGTAI_RUNTIME_PYTHON \
       -u LINGTAI_RUNTIME_VENV \
       -u LINGTAI_REFRESH_ENV_OVERWRITE \
       "$VENV_PY" -m lingtai run "$ROOT"
   

4. Verify the relaunch, not just that a process exists: new parent/children PIDs and PPID 1; ps eww shows PYTHONPATH absent; sys.executable, lingtai.__file__, kernel.find_spec, and direct_url all resolve from the intended venv/source; heartbeat fresh; a producer-channel read (e.g. Telegram) and a self-email canary both PASS; the old PID is absent. Preserve any old rollback/evidence and do not do a second refresh.

This recipe was proven on 2026-08-09 when a dev agent's live parent inherited PYTHONPATH from its launch session (pointing at another project's scratch src), survived the first refresh, and required exactly this clean relaunch before import lingtai resolved from the intended frozen source.

Related references

• Kernel system-manual → reference/refresh-precheck/SKILL.md — own the ordinary refresh transaction and targeted receipt.
• reference/setup/SKILL.md — establish or recover editable dev mode and supply update/build target evidence.
• reference/gotchas/SKILL.md — dev-mode rebuild gotcha, editable-install behaviour.
• reference/debug-troubleshoot/SKILL.md — failing networks, MCP boot, preset/path mismatch.
• reference/security-audit/SKILL.md — full secret/permission audit and safe-reporting format.
• reference/cache-hit-rate/SKILL.md — the token-ledger measurement that proves a cache fix took effect.