Una Skill. Una posibilidad completamente nueva. Encuentra tu próximo workflow.
bio-metagenomics-functional-profiling
Profiles the functional potential of shotgun metagenomes with HUMAnN 3's tiered search (MetaPhlAn prescreen, Bowtie2 pangenome, translated DIAMOND vs UniRef), giving gene-family (RPK) and MetaCyc pathway abundances stratified by species. Covers why a metagenome measures potential not activity, why dropping UNMAPPED/UNINTEGRATED biases everything, why strati…
bio-rna-quantification-tximport-workflow
Import transcript-level quantifications from Salmon/kallisto/RSEM into R for gene-level analysis with DESeq2/edgeR using tximport or tximeta. Use when summarizing transcript abundances to gene counts with the correct length offset, choosing a countsFromAbundance mode (full-length vs 3'-tag vs DTU), resolving transcript-ID version mismatches, or handing off …
bio-workflows-metagenomics-pipeline
End-to-end shotgun metagenomics workflow from FASTQ to taxonomic and functional profiles, orchestrating controls/host depletion, Kraken2+Bracken classification, MetaPhlAn marker profiling, and HUMAnN functional profiling. Covers the controls-first ordering, why Kraken2 read counts are not abundances and MetaPhlAn cell fractions do not equal Bracken read fra…
sanity-singletons
Configure singleton documents in a Sanity Studio using the document.singletons registry. Use when a developer wants a fixed-id document (settings, navigation, footer) edited in place, hidden from the default content list, with no "create new" or "duplicate" affordances — or when migrating a userland singleton implementation or a third-party singleton plugin…
critique-affordance
Critique a screen's interactive affordances — what looks clickable, state visibility, CTA clarity, and action discoverability.
securite-anssi
Règles essentielles de sécurité ANSSI pour le développement d'applications de l'État. 12 règles couvrant TLS, secrets, authentification, headers, dépendances, entrées, logs et durcissement. Utiliser cette skill quand l'utilisateur développe une application web, une API, ou tout service exposé, quand il mentionne la sécurité, l'ANSSI, le durcissement, ou qua…
security-dependency-audit
Audit de sécurité des dépendances — détection de vulnérabilités connues, mises à jour critiques et gestion du cycle de vie des packages. À utiliser quand l'utilisateur veut vérifier la sécurité de ses dépendances, mettre à jour des packages vulnérables ou mettre en place un processus d'audit continu. Se déclenche aussi avec "audit dépendances", "vulnérabili…
semiotics
Use when designing or auditing icon systems, colors/badges/shapes, visual metaphors, interface signs, or naming-plus-visual surfaces that users misread. Covers semiotic reasoning across icon/index/symbol, signifier/signified, denotation/connotation/myth, color/shape/position/iconography, affordances, code/API signifiers, and semiotic-coherence audits. Do NO…
affordances
Los objetos deben sugerir cómo se usan. Use cuando diseñe botones, controles interactivos, o cualquier elemento que invite a la acción.
affordances
Los objetos deben sugerir cómo se usan. Use cuando diseñe botones, controles interactivos, o cualquier elemento que invite a la acción.
affordances
Los objetos deben sugerir cómo se usan. Use cuando diseñe botones, controles interactivos, o cualquier elemento que invite a la acción.
bio-metagenomics-abundance
Species abundance estimation using Bracken with Kraken2 output. Redistributes reads from higher taxonomic levels to species for more accurate estimates. Use when accurate species-level abundances are needed from Kraken2 classification output.
bio-metagenomics-abundance
Species abundance estimation using Bracken with Kraken2 output. Redistributes reads from higher taxonomic levels to species for more accurate estimates. Use when accurate species-level abundances are needed from Kraken2 classification output.
bio-metagenomics-abundance
Species abundance estimation using Bracken with Kraken2 output. Redistributes reads from higher taxonomic levels to species for more accurate estimates. Use when accurate species-level abundances are needed from Kraken2 classification output.
bio-metagenomics-functional-profiling
Profile functional potential of metagenomes using HUMAnN3 and similar tools. Use when obtaining pathway abundances, gene family counts, or functional annotations from metagenomic data.
bio-metagenomics-metaphlan
Marker gene-based taxonomic profiling using MetaPhlAn 4. Provides accurate species-level relative abundances using clade-specific markers. Use when accurate taxonomic profiling is needed and computational resources are limited, or for comparison with HMP/other MetaPhlAn studies.
bio-microbiome-functional-prediction
Predict metagenome functional content from 16S rRNA marker gene data using PICRUSt2. Infer KEGG, MetaCyc, and EC abundances from ASV tables. Use when functional profiling is needed from 16S data without shotgun metagenomics sequencing.
bio-proteomics-quantification
Protein quantification from mass spectrometry data including label-free (LFQ, intensity-based), isobaric labeling (TMT, iTRAQ), and metabolic labeling (SILAC) approaches. Use when extracting protein abundances from MS data for differential analysis.
An independently imported catalog with original authors, licenses and source links. Classification is not a security audit.
Sources and import coverage