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258 Skillstreating

bio-rna-structure-secondary-structure-prediction

bio-rna-structure-secondary-structure-prediction

Predicts RNA secondary structure with ViennaRNA, treating the Boltzmann ensemble (partition function, base-pair probabilities, centroid, MEA, stochastic samples) as the object rather than a single MFE fold. Covers consensus folding from alignments (RNAalifold), SHAPE-constrained folding, RNA-RNA interaction (RNAcofold/RNAduplex/RNAup), local and linear-time…

ProduktivitätSKILL.mdVollständiges ZIP

bio-structural-biology-alphafold-predictions

bio-structural-biology-alphafold-predictions

Retrieves and interprets AlphaFold Protein Structure Database (AFDB) models by UniProt accession, reading pLDDT and PAE confidence correctly. Use when treating pLDDT as PER-RESIDUE confidence (not global accuracy) and recognizing a long low-pLDDT stretch as an intrinsically disordered region rather than a modeling error; reading PAE to segment confident dom…

Daten und ForschungSKILL.mdVollständiges ZIP
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