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kernel-microbenchmark
Build, debug, and interpret vLLM GPU kernel microbenchmarks for CUDA, ROCm/HIP, Triton, and CuteDSL, including CUPTI timing, correctness checks, generated-code inspection, multi-GPU measurements, and SOL sanity checks.
13c-metabolic-flux
Estimates intracellular metabolic fluxes from steady-state carbon-13 isotope-tracing measurements using validated atom maps, mfapy isotope simulation, constrained multistart fitting, and flux-profile diagnostics. Use for 13C-MFA, carbon tracing, mass isotopomer distributions (MDVs/MIDs), positional isotopomers, parallel tracer experiments, and determining w…
cellprofiler
Runs reproducible CellProfiler microscopy pipelines for nuclear segmentation, cell counts, and per-object fluorescence measurements. Supports image/channel manifests, headless batch execution, segmentation overlays, and measurement QC for 2D fluorescence assays.
hypothesis-generation
Formulates evidence-bounded scientific questions, candidate hypotheses, rival explanations, causal or associational claims, discriminating predictions, measurements, and preregistration-ready analysis plans. Used when turning observations or preliminary findings into transparent, testable research plans without treating hypotheses as facts.
marine-carbonate-chemistry
Solves seawater carbonate chemistry with PyCO2SYS for chemical oceanography, ocean acidification, and marine carbon-cycle research. Use for paired total alkalinity, dissolved inorganic carbon, pH, or seawater pCO2/fCO2 measurements; carbonate speciation; aragonite and calcite saturation; Revelle factors; lab-to-in-situ temperature and pressure corrections; …
etl-to-omop-cdm
Map OpenMed-extracted, terminology-coded conditions, drugs, and measurements into OMOP CDM v5.4 clinical tables (condition_occurrence, drug_exposure, measurement) for OHDSI/ATLAS analytics. Use when the user wants to load NLP-derived facts into an OMOP database, build an OHDSI ETL from clinical notes, populate condition_occurrence or drug_exposure from text…
structuring-radiology-reports
Converts free-text radiology narratives into structured findings and impression — with measurements, laterality, anatomy, and follow-up recommendations — after OpenMed NER. Use when the user has a CT/MRI/X-ray/ultrasound/mammography report and needs the sections split (technique, comparison, findings, impression), lesion measurements and laterality captured…
hypothesis-generation
Formulate evidence-bounded scientific questions, candidate hypotheses, rival explanations, causal or associational claims, discriminating predictions, measurements, and preregistration-ready analysis plans. Use when turning observations or preliminary findings into transparent, testable research plans without treating hypotheses as facts.
surface-analysis
Skill for surface composition, chemical state, and topography analysis including XPS depth profiling, AFM imaging, and contact angle measurements
fluorescence-spectroscopy-analyzer
Fluorescence spectroscopy skill for quantum dot characterization, FRET measurements, and photoluminescence analysis
nta-particle-tracker
Nanoparticle Tracking Analysis skill for single-particle size and concentration measurements
stm-analyzer
Scanning Tunneling Microscopy skill for atomic-resolution imaging and local density of states measurements
tooluniverse-image-analysis
Microscopy and quantitative imaging analysis — colony morphometry, fluorescence intensity quantification, cell-count statistics, dose-response curves, and ANOVA/Dunnett on image-derived measurements. Uses pandas/numpy/scipy/scikit-image. Use for analyzing tabular outputs from CellProfiler/ImageJ, image-derived measurement statistics, and image-based assay q…
tooluniverse-image-analysis
Microscopy and quantitative imaging analysis — colony morphometry, fluorescence intensity quantification, cell-count statistics, dose-response curves, and ANOVA/Dunnett on image-derived measurements. Uses pandas/numpy/scipy/scikit-image. Use for analyzing tabular outputs from CellProfiler/ImageJ, image-derived measurement statistics, and image-based assay q…
tooluniverse-image-analysis
Microscopy and quantitative imaging analysis — colony morphometry, fluorescence intensity quantification, cell-count statistics, dose-response curves, and ANOVA/Dunnett on image-derived measurements. Uses pandas/numpy/scipy/scikit-image. Use for analyzing tabular outputs from CellProfiler/ImageJ, image-derived measurement statistics, and image-based assay q…
open-targets
Query the Open Targets Platform GraphQL API for gene-drug-disease associations, evidence scores, and therapeutic target validation. Use when the user needs disease associations for a gene, drug evidence for a target, or target prioritization for a disease. NOT for compound property lookup (use pubchem-compound), NOT for bioactivity measurements (use chembl-…
asserting-bounds-and-dimensions
Use this skill to verify Compose layout measurements from a UI test using `assertWidthIsEqualTo`, `assertHeightIsEqualTo`, `assertWidthIsAtLeast`, `assertHeightIsAtLeast`, `assertTouchWidthIsEqualTo`, `assertTouchHeightIsEqualTo`, `assertPositionInRootIsEqualTo`, `assertTopPositionInRootIsEqualTo`, `assertLeftPositionInRootIsEqualTo`, plus read helpers `get…
handoff-spec
Create developer handoff specifications with measurements, behaviors, assets, and edge cases.
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