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bgpt-paper-search
Searches BGPT scientific papers by topic or DOI and retrieves claim-level evidence extracted from full text, including experiments, reported statistics, scope, limitations, and provenance. Use for literature reviews, evidence synthesis, and finding experimental details beyond abstracts.
folklore-variant-evidence
Retrieves ClinGen gene-disease validity assertions for a public gene or disease, and reviews source-linked public evidence and literature for one supported GRCh38 germline nuclear SNV or simple indel through Folklore Clinical Variant Interpretation MCP. Used when a scientific agent must branch deterministically on resolved, ambiguous, not-found, invalid, un…
literature-review
Conducts systematic, scoping, and narrative literature reviews using PubMed, arXiv, bioRxiv, Semantic Scholar, and other appropriate sources. Use for research synthesis, reproducible literature searches, screening, citation checking, or preparing Markdown and PDF reviews. Tracks search coverage, records versus studies, and evidence limitations; supports met…
research-lookup
Compiles current scholarly evidence for a scientific manuscript or research brief when the user explicitly asks to gather literature, references, background evidence, competing findings, or a manuscript research packet. Uses Parallel Search by default, Parallel Extract for source retrieval, Parallel Research for explicitly deep/exhaustive work, optional exp…
brooks-test
Review test-suite quality using established testing literature; identify brittleness, mock abuse, unclear fixtures, weak assertions, slow feedback, and maintenance risks.
gemini-deep-research
Run autonomous multi-step research with Google's Gemini Deep Research Agent: kick off a query, poll progress, and collect a cited report for market analysis or literature reviews.
scientific-writing
This is the core skill for the deep research and writing tool—combining AI-driven deep research with well-formatted written outputs. Every document produced is backed by comprehensive literature search and verified citations through the research-lookup skill.
litreview
Academic literature orientation skill that searches papers via free keyless APIs (PubMed E-utilities + OpenAlex) by default — with the Consensus MCP as an optional enhancement lane when connected — builds a strategic search plan using PICO (default) or SPIDER / Decomposition / hybrid as fallbacks, and synthesizes findings into a formatted Word (.docx) resea…
research
Default entry point for any research request — a hybrid router that classifies the question deterministically and either delegates to a specialist research skill (pulse for trends/sentiment, grants for NIH funding, litreview for academic literature, syllabus for course reading, patent for prior-art + IP landscape, dossier for entity research, deepread for e…
mining-pubmed-literature
Searches and fetches PubMed and PMC via NCBI E-utilities (ESearch then EFetch/ESummary) to gather biomedical evidence and build text corpora. Use when the user wants citations for a condition or drug, abstracts to summarize, MeSH-based searches, or a corpus of literature to run NER over. Trigger keywords: PubMed, PMC, NCBI, E-utilities, ESearch, EFetch, ESu…
literature-review
Find, verify, and synthesize scientific literature — from "what's the seminal paper for X" through full multi-source reviews. Covers grounding claims in real retrieved sources, avoiding fabricated citations, handling retractions, and calibrating confidence to evidence strength.
literature-review
Conduct comprehensive, systematic literature reviews using multiple academic databases (PubMed, arXiv, bioRxiv, Semantic Scholar, etc.). This skill should be used when conducting systematic literature reviews, meta-analyses, research synthesis, or comprehensive literature searches across biomedical, scientific, and technical domains. Creates professionally …
research-lookup
Compile current scholarly evidence for a scientific manuscript or research brief. Use when the user explicitly asks to gather literature, references, background evidence, competing findings, or a manuscript research packet. Uses Parallel Search by default, Parallel Extract for source verification, Parallel Research for explicitly deep/exhaustive work, optio…
clinical-literature-reviewer
Systematic literature review skill for clinical evaluation supporting regulatory submissions
arxiv-search-interface
Search and analyze mathematical literature on arXiv
elicit-research-assistant
AI-assisted literature review for question-answering over papers and evidence synthesis
pubmed-literature-miner
Biomedical literature mining using PubMed/MEDLINE for systematic review support
semantic-scholar-search
Academic literature search using Semantic Scholar API for citation-aware paper discovery
An independently imported catalog with original authors, licenses and source links. Classification is not a security audit.
Sources and import coverage