cellpose-cell-segmentation

DL cell/nucleus segmentation for fluorescence and brightfield microscopy with Cellpose 4's Cellpose-SAM and CellposeDINO models. Handles grayscale, multichannel, 2D, and 3D images and outputs label masks for morphology and tracking. Use scikit-image watershed for rule-based segmentation; use Cellpose when learned generalization is needed.

Independent GitHub snapshot · Automated classification · Original documentation governs