Use this skill whenever the user wants to do anything with PDF files. This includes reading or extracting text/tables from PDFs, combining or merging multiple PDFs into one, splitting PDFs apart, rotating pages, adding watermarks, creating new PDFs, filling PDF forms, encrypting/decrypting PDFs, extracting images, and OCR on scanned PDFs to make them search…
THE SKILLS DIRECTORY
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cobrapy
cobrapy
Performs constraint-based metabolic modeling with COBRApy, including FBA, pFBA, FVA, gene knockouts, flux sampling, growth media, production envelopes, gap filling, and SBML model validation for systems biology and metabolic engineering.
agent-browser
agent-browser
Browser automation CLI for AI agents. Use when the user needs to interact with websites, including navigating pages, filling forms, clicking buttons, taking screenshots, extracting data, testing web apps, or automating any browser task. Triggers include requests to "open a website", "fill out a form", "click a button", "take a screenshot", "scrape data from…
playwright-automation-fill-in-form
playwright-automation-fill-in-form
Automate filling in a form using Playwright MCP
playwright
playwright
Use when the task requires automating a real browser from the terminal (navigation, form filling, snapshots, screenshots, data extraction, UI-flow debugging) via `playwright-cli` or the bundled wrapper script.
writing-lean-proofs
writing-lean-proofs
Writes and reviews structured Lean 4 proofs and designs Lean libraries following Mathlib conventions. Use when proving theorems in Lean, formalizing mathematics or specifications in Lean 4, defining new types or definitions in a Lean library, reviewing Lean proofs for readability and maintainability, refactoring long tactic proofs into lemmas, filling in so…
render-whiteboard-explainer
render-whiteboard-explainer
Assemble a whiteboard explainer video ad from a beats file — a narrator explains one idea while a real whiteboard fills up in black marker, with a hand-lettered title, bulleted rows down the left, a drawing filling the right, and a payoff that letters the closing line and rings the claim. The board is a PHOTOGRAPH and the ink is multiplied onto it, so the s…
bio-metabolomics-msdial-preprocessing
bio-metabolomics-msdial-preprocessing
Runs the MS-DIAL preprocessing workflow (peak picking, MS2Dec spectral deconvolution, alignment, gap-filling) and imports the alignment-result table into R or Python with honest filtering. Use when preprocessing LC-MS DDA/DIA (SWATH) raw data with MS-DIAL, deciding MS-DIAL vs XCMS, configuring the MsdialConsoleApp console run, or parsing an MS-DIAL export i…
bio-metabolomics-xcms-preprocessing
bio-metabolomics-xcms-preprocessing
Programmatic untargeted LC-MS feature extraction in R with the modern xcms 4.x MsExperiment/XcmsExperiment API, taking raw mzML to a feature table via CentWave peak detection, retention-time alignment, peak-density correspondence, gap-filling, CAMERA redundancy collapse, and built-in QC feature filtering. Use when converting centroided LC-MS runs into a fea…
bio-structural-biology-structure-preparation
bio-structural-biology-structure-preparation
Prepares a deposited or predicted structure for docking, molecular dynamics, or electrostatics by adding hydrogens, assigning protonation and tautomer states, and filling missing atoms and short loops with PDBFixer, reduce, PROPKA, and PDB2PQR. Use when adding hydrogens an X-ray model never resolved; assigning His HID/HIE/HIP tautomers, Asn/Gln/His 180-degr…
bio-systems-biology-metabolic-reconstruction
bio-systems-biology-metabolic-reconstruction
Builds draft genome-scale metabolic models from an annotated genome using CarveMe (top-down carving of a BiGG universal model) or gapseq (bottom-up pathway-evidence reconstruction), then loads and sanity-checks the draft in COBRApy. Use when creating a model for an organism without one, choosing between CarveMe and gapseq, gap-filling to a target medium, un…
bio-systems-biology-model-curation
bio-systems-biology-model-curation
Validates, gap-fills, and standardizes genome-scale metabolic models using memote for consistency and annotation scoring and COBRApy for manual curation, including mass/charge balance, energy-generating-cycle detection, dead-end resolution, GPR fixes, and SBML/SBO/MIRIAM annotation. Use when improving a draft model, gap-filling to a target medium, detecting…
bio-workflows-metabolic-modeling-pipeline
bio-workflows-metabolic-modeling-pipeline
Orchestrates genome-scale metabolic modeling from a protein FASTA to flux predictions, chaining CarveMe/gapseq reconstruction, memote QC, gap-filling, media-constrained FBA/FVA, gene essentiality, and context-specific models. Use when committing the reconstruction tool (which locks the identifier NAMESPACE forever - BiGG vs ModelSEED vs KEGG, no automatic t…
asc-subscription-localization
asc-subscription-localization
Bulk-localize subscription, subscription-group, and in-app purchase display names across App Store locales using asc, including API 4.4.1 version-scoped v2 resources. Use when filling or updating subscription/IAP names and descriptions without App Store Connect UI work.
source-locked-verification
source-locked-verification
No Inference / Source-Locked Verification. Forces Claude to answer ONLY from user-provided materials and/or online sources actually accessed — no inference, no assumptions, no gap-filling. Every factual, legal, numerical, or procedural claim must be anchored to a cited source. Use whenever Claude reviews documents, summarises evidence, checks accuracy, draf…
data-analyst
data-analyst
This skill should be used when analyzing CSV datasets, handling missing values through intelligent imputation, and creating interactive dashboards to visualize data trends. Use this skill for tasks involving data quality assessment, automated missing value detection and filling, statistical analysis, and generating Plotly Dash dashboards for exploratory dat…
chatbot-conversation-design
chatbot-conversation-design
Design structured, engaging chatbot conversations with robust intent handling, slot filling, disambiguation, error recovery, and graceful fallback strategies. Use when the user requests chatbot conversation design or provides relevant inputs for this workflow.
crm-data-enrichment
crm-data-enrichment
Enrich CRM records with firmographic and contact data, filling gaps in company and person profiles to improve segmentation, routing, and outreach quality. Use when the user requests crm data enrichment or provides relevant inputs for this workflow.
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